ericcapo / marky-cocoLinks
Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
☆10Updated last year
Alternatives and similar repositories for marky-coco
Users that are interested in marky-coco are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- ☆14Updated 2 years ago
- ☆16Updated 8 months ago
- ☆56Updated 6 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- Prophage Activity Estimator☆30Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆22Updated 5 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Population genomics from metagenomes☆12Updated last year
- code repo for mobileOG-db☆43Updated 2 months ago
- ☆22Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago