Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
☆10May 17, 2024Updated 2 years ago
Alternatives and similar repositories for marky-coco
Users that are interested in marky-coco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆17Apr 13, 2026Updated last month
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- ☆46Jun 27, 2023Updated 2 years ago
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- R tools for reconstructing metabolisms.☆14May 13, 2026Updated last week
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 7, 2026Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated 2 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Utilities for community ecology analysis☆20Oct 2, 2020Updated 5 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Apr 22, 2026Updated 3 weeks ago
- A Swiss-Army-Knife for Bioinformaticians☆15May 11, 2026Updated last week
- Systematic search of all known anti-phage systems.☆168May 5, 2026Updated 2 weeks ago
- ☆52Mar 29, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated last year
- ☆10Mar 29, 2025Updated last year
- ☆16Nov 21, 2025Updated 5 months ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 3 months ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆41Feb 9, 2022Updated 4 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- simple and not slow ORF caller☆23Apr 7, 2026Updated last month
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- GraftM - Rapid community profiles from metagenomes☆52Nov 6, 2025Updated 6 months ago
- random collection of scripts used to process sequences☆10Dec 16, 2025Updated 5 months ago
- R package for multiblock analyses☆18Apr 1, 2025Updated last year