CCB-SB / plsdbLinks
PLSDB pipeline to collect bacterial plasmids from NCBI
☆39Updated last year
Alternatives and similar repositories for plsdb
Users that are interested in plsdb are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- Discover and annotate the virome☆54Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Bacterial GWAS analysis☆46Updated last month
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- Prophage Activity Estimator☆28Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- MAG Circularization Method☆32Updated last month
- ☆33Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- IslandPath standalone software☆34Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- Unified Human Gut Virome Catalog☆38Updated last month
- ☆38Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated this week