CCB-SB / plsdbLinks
PLSDB pipeline to collect bacterial plasmids from NCBI
☆39Updated last year
Alternatives and similar repositories for plsdb
Users that are interested in plsdb are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Prophage Activity Estimator☆30Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- IslandPath standalone software☆35Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Discover and annotate the virome☆58Updated 3 months ago
- Bacterial GWAS analysis☆46Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ☆16Updated 5 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Calculate assocations between genes and traits☆29Updated 10 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- MAG Circularization Method☆32Updated 2 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Split Kmer Analysis☆67Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- ☆45Updated 2 years ago