joshuakirsch / pseudoRLinks
☆17Updated 9 months ago
Alternatives and similar repositories for pseudoR
Users that are interested in pseudoR are comparing it to the libraries listed below
Sorting:
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 weeks ago
- ☆53Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Bacterial GWAS analysis☆43Updated last month
- ☆20Updated 11 months ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆40Updated 2 years ago
- http://huttenhower.sph.harvard.edu/waafle☆20Updated 8 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated last year
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- scripts for microbiome analysis☆11Updated last year
- ☆18Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆13Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- ☆19Updated 2 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- zDB: comparative bacterial genomics made easy☆35Updated last week