KwanLab / AutometaLinks
Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
☆44Updated 10 months ago
Alternatives and similar repositories for Autometa
Users that are interested in Autometa are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- ☆40Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆51Updated last year
- Microbiome classification pipeline☆65Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆69Updated this week
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Pipeline for analysing intergenic regions in bacteria☆40Updated 6 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆20Updated 6 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- An R package designed for drawing gene arrow maps☆92Updated 2 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 10 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 4 months ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- ☆73Updated last week
- Graph-based assembly phasing☆90Updated this week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆53Updated last month
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- Strain Resolution ON Graphs☆49Updated 2 years ago