Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
☆45Jan 24, 2025Updated last year
Alternatives and similar repositories for Autometa
Users that are interested in Autometa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- A user-friendly workflow for phylogenomics☆234Updated this week
- Microbiome classification pipeline☆68May 13, 2025Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioinformatics program inStrain☆193Mar 12, 2026Updated 6 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Sep 7, 2026Updated 2 weeks ago
- ☆25Feb 7, 2022Updated 4 years ago
- Unified Human Gut Virome Catalog☆48May 29, 2026Updated 3 months ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 3 months ago
- ☆24Dec 5, 2018Updated 7 years ago
- ☆64Updated this week
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 3 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated last week
- MAG Circularization Method☆33Nov 4, 2025Updated 10 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated last month
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 weeks ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Aug 27, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated 2 weeks ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated 3 weeks ago
- ☆43Feb 14, 2021Updated 5 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated last month
- Plasmid and antimicrobial resistance pipeline☆16Sep 11, 2026Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆156Jul 24, 2026Updated last month
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆84Aug 23, 2026Updated 3 weeks ago
- ☆22Sep 4, 2024Updated 2 years ago
- Predict AMPs in (meta)genomes and peptides☆98Jul 19, 2026Updated 2 months ago
- ☆39May 20, 2026Updated 4 months ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago