KwanLab / AutometaLinks
Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
☆45Updated last year
Alternatives and similar repositories for Autometa
Users that are interested in Autometa are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 7 months ago
- ☆45Updated 2 years ago
- Microbiome classification pipeline☆65Updated 8 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Updated last year
- MAG Circularization Method☆32Updated 2 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- AMBER: Assessment of Metagenome BinnERs☆32Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated last month
- Graph-based assembly phasing☆90Updated 2 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated last week
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated last week
- Linking MAGs with 16S rRNA marker genes☆27Updated 11 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Updated 6 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated last month
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆52Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago