Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
☆24May 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for genome_uploader
Users that are interested in genome_uploader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆46Jun 27, 2023Updated 2 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- ☆23Feb 7, 2022Updated 4 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆31May 9, 2025Updated last year
- ☆24Dec 5, 2018Updated 7 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆14Feb 13, 2026Updated 3 months ago
- Estimate metagenomic coverage and sequence diversity☆61Dec 18, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- ☆10Mar 29, 2025Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 7 months ago
- ☆42Feb 14, 2021Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 7 months ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 2 months ago
- ☆60May 11, 2026Updated 2 weeks ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆54May 16, 2026Updated last week
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- gutSMASH☆59Oct 3, 2025Updated 7 months ago
- ☆19Nov 8, 2022Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆23May 14, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆26Jun 20, 2023Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 4 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 6 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆12Jan 23, 2026Updated 4 months ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago