Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
☆24Jul 30, 2026Updated last month
Alternatives and similar repositories for genome_uploader
Users that are interested in genome_uploader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆47Jun 27, 2023Updated 3 years ago
- ☆25Feb 7, 2022Updated 4 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 11 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Sep 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- ☆24Dec 5, 2018Updated 7 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆63Aug 5, 2026Updated last month
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scripts for estimating bacteria replication rates based on population genome copy number variation☆76Dec 28, 2019Updated 6 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 10 months ago
- ☆12Mar 29, 2025Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated this week
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 6 months ago
- ☆43Feb 14, 2021Updated 5 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆19Aug 7, 2026Updated last month
- GTDB => NCBI☆16Nov 14, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆63Jul 16, 2026Updated last month
- Read alignment statistics for metagenomics☆406Jul 10, 2026Updated last month
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆11May 17, 2024Updated 2 years ago
- gutSMASH☆60Oct 3, 2025Updated 11 months ago
- ☆19Nov 8, 2022Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 9 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- ☆57Mar 29, 2026Updated 5 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 10 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 7 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- ☆18May 27, 2026Updated 3 months ago