jameslz / ncbi-kit
Download NCBI assembly genomes with ftp. rsync, ascp
☆10Updated 2 years ago
Alternatives and similar repositories for ncbi-kit:
Users that are interested in ncbi-kit are comparing it to the libraries listed below
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated last year
- DarkHorse2 source code☆10Updated 2 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 6 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 2 weeks ago
- Automatic evaluation of HGTs☆28Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- Multi-genome synteny block visualization tool☆33Updated 2 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- ContScout sequence contamination filter tool☆20Updated 2 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆16Updated 3 years ago
- Quality control plotting for long reads☆10Updated 10 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆14Updated last week
- Genomewide Epistasis Analysis on Bacteria☆14Updated 6 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Genome alignment and synteny plots☆29Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- ☆22Updated 7 months ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- plot genome alignment synteny☆21Updated 4 years ago
- Hierarchical clustering of cgMLST☆11Updated last year