Alternatives and similar repositories for ncbi-kit:

Users that are interested in ncbi-kit are comparing it to the libraries listed below

• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 5 years ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆26Updated last month
• Sudaraka88 / LDWeaver
  Genomewide Epistasis Analysis on Bacteria
  ☆14Updated 5 months ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆19Updated 4 years ago
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 5 months ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆25Updated 2 years ago
• yinlabniu / HGT-Finder
  Program for finding horizontal gene transfer using BLAST result
  ☆11Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• at-cg / RAFT
  ☆22Updated 6 months ago
• sheppardlab / pGWAS
  pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria
  ☆11Updated 7 years ago
• tseemann / snasm
  Assembly based core SNP alignments
  ☆7Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• spencer411 / FastANI_heatmap
  This repository contains R code for building a heatmap and histogram with the output of FastANI
  ☆16Updated 3 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated 9 months ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 5 months ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆14Updated 2 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• spodell / Darkhorse2
  DarkHorse2 source code
  ☆10Updated 2 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated last year
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆49Updated 2 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆28Updated last year
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated 2 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated this week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆20Updated last year
• kwongj / fa-rename
  Renames headers in FASTA file
  ☆12Updated 7 years ago
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆56Updated last month
• moshi4 / FastDTLmapper
  Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
  ☆15Updated 2 years ago