CAMI-challenge / second_challenge_evaluation
Repository for codes, analyses and visualizations for the CAMI II challenges
☆11Updated last year
Alternatives and similar repositories for second_challenge_evaluation:
Users that are interested in second_challenge_evaluation are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 4 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 11 months ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- ☆13Updated 6 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 7 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 10 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆25Updated 2 weeks ago
- transposable element typing pipeline☆17Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- ☆11Updated last year
- ☆13Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- ☆30Updated last year
- Genome size estimation from long read overlaps☆52Updated last week