Alternatives and similar repositories for second_challenge_evaluation

Users that are interested in second_challenge_evaluation are comparing it to the libraries listed below

• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 2 years ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 3 weeks ago
• mathjeff / Mapper
  Genomic sequence aligner
  ☆29Updated last week
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆30Updated 2 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated last year
• KoslickiLab / YACHT-reproducibles
  A repo to reproduce the experiments in the YACHT manuscript
  ☆11Updated last year
• NeLLi-team / gvclass
  ☆16Updated last month
• metagentools / VStrains
  VStrains is a de novo approach for reconstructing strains from viral quasispecies.
  ☆23Updated 7 months ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆22Updated 2 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 3 months ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• Puumanamana / CoCoNet
  Tool for unsupervised contig binning from viral metagenomes
  ☆17Updated 3 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆25Updated 2 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆43Updated last month
• raw-lab / DeGenPrime
  Primer design from single genes to whole gene families for unlocking the tree of life
  ☆16Updated 3 months ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆50Updated 3 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆52Updated 5 months ago
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆22Updated 4 months ago
• SushiLab / mVIRs
  ☆12Updated last year
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated 11 months ago
• mbhall88 / classification_benchmark
  Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
  ☆12Updated last year
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆31Updated 2 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago