michaelkyu / PlasXLinks
PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
☆37Updated 3 years ago
Alternatives and similar repositories for PlasX
Users that are interested in PlasX are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- ☆21Updated 3 years ago
- ☆26Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- ☆16Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Population genomics from metagenomes☆12Updated 11 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- ☆34Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆52Updated last month
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 3 months ago
- ☆19Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- ☆32Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆72Updated last month
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- ☆37Updated last year
- ☆13Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year