PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
☆42Feb 9, 2022Updated 4 years ago
Alternatives and similar repositories for PlasX
Users that are interested in PlasX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Feb 7, 2022Updated 4 years ago
- PlasRAG is a deep learning-based tool specifically designed for analyzing plasmids, which serves two purposes: (1) plasmid property chara…☆10Dec 24, 2025Updated 10 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Apr 20, 2023Updated 3 years ago
- ☆39Apr 15, 2024Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆40Oct 23, 2024Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Oct 27, 2026Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated 2 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- WDL Workflow for metagenome assembly☆11Aug 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆17Sep 25, 2024Updated 2 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Oct 22, 2026Updated 2 weeks ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 29, 2026Updated last week
- ☆47Jun 27, 2023Updated 3 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆342Oct 14, 2026Updated 3 weeks ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- transposable element typing pipeline☆20Sep 28, 2026Updated last month
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 9 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Oct 29, 2026Updated last week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- ☆10Jun 9, 2020Updated 6 years ago
- ☆121Oct 16, 2026Updated 3 weeks ago
- Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships☆12Oct 15, 2026Updated 3 weeks ago
- A Python package for working with Bactopia☆12Aug 5, 2026Updated 3 months ago