michaelkyu / PlasXLinks
PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
☆37Updated 3 years ago
Alternatives and similar repositories for PlasX
Users that are interested in PlasX are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Prophage Activity Estimator☆26Updated last year
- ☆21Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- ☆26Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆20Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 3 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- ☆16Updated 4 months ago
- ☆33Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- ☆31Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 4 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 9 months ago
- ☆37Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆32Updated 5 months ago
- ☆20Updated last year