PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
☆40Feb 9, 2022Updated 4 years ago
Alternatives and similar repositories for PlasX
Users that are interested in PlasX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Feb 7, 2022Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated last month
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆25Apr 20, 2023Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- ☆45Jun 27, 2023Updated 2 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- ☆33Apr 15, 2024Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆68Mar 2, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆40Oct 23, 2024Updated last year
- R package for microbial pangenomics☆24Apr 12, 2022Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Jun 9, 2025Updated 9 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 7 years ago
- Creating plasmid maps inside ggplot.☆92Sep 2, 2025Updated 6 months ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated last week
- ☆20Sep 4, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆183Mar 19, 2026Updated last week
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆296Mar 18, 2026Updated last week