maurijlozano / ISCompare
ISCompare, an opensource program to identify Differentially Located Insertion Sequences
☆13Updated 8 months ago
Alternatives and similar repositories for ISCompare:
Users that are interested in ISCompare are comparing it to the libraries listed below
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ☆13Updated 7 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 9 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆10Updated 2 years ago
- http://huttenhower.sph.harvard.edu/waafle☆13Updated 4 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- ☆11Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Generate basic stats for an assembly.☆11Updated 2 years ago
- scripts for microbiome analysis☆11Updated 9 months ago
- Dadaist2 🟨 Highway to R☆13Updated last month
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- MAG Circularization Method☆33Updated 2 years ago