maurijlozano / ISCompareLinks
ISCompare, an opensource program to identify Differentially Located Insertion Sequences
☆14Updated last year
Alternatives and similar repositories for ISCompare
Users that are interested in ISCompare are comparing it to the libraries listed below
Sorting:
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Updated 4 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last week
- A Swiss-Army-Knife for Bioinformaticians☆14Updated this week
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- ☆25Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- Bacterial taxonomy construction and evaluation in R☆15Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 8 months ago
- Bacterial GWAS analysis☆46Updated last week
- ☆13Updated 8 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago
- Finding regions of similarity between plasmids☆17Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Calculate assocations between genes and traits☆29Updated 10 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago