HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
☆66Mar 2, 2022Updated 4 years ago
Alternatives and similar repositories for FeGenie
Users that are interested in FeGenie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆222Mar 24, 2026Updated 3 weeks ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- ☆21Sep 4, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- ☆19Apr 1, 2025Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- ☆49Mar 13, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆92Mar 30, 2026Updated 2 weeks ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆35Jul 12, 2022Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆44Feb 17, 2023Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 11 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- metabolic heatmap☆22May 12, 2019Updated 6 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆38Mar 13, 2026Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 7 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Feb 8, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated last month
- Horizontal gene transfer (HGT) identification pipeline☆71May 17, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 5 months ago
- ☆33Feb 10, 2025Updated last year
- Similarity networks of biosynthetic gene clusters☆165Apr 1, 2026Updated 2 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 3 months ago