SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z
☆38Feb 26, 2023Updated 3 years ago
Alternatives and similar repositories for SCAPP
Users that are interested in SCAPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆30Jun 22, 2026Updated 3 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- snapper☆14Jul 8, 2024Updated 2 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- ☆13Sep 4, 2017Updated 8 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- ☆24Feb 7, 2022Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆124May 29, 2026Updated last month
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆74Mar 16, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Jul 10, 2026Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- ☆15May 21, 2026Updated 2 months ago
- Plasmid analysis using rearrangement distances☆56Updated this week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- ☆36Apr 15, 2024Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆192Updated this week
- ☆63Updated this week
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆77Jul 13, 2026Updated last week
- ☆23Jan 6, 2026Updated 6 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- ☆13Aug 15, 2025Updated 11 months ago
- ☆17Updated this week
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆36Apr 10, 2026Updated 3 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- ☆11Feb 9, 2024Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆149Jul 8, 2026Updated last week
- ☆33Jul 14, 2021Updated 5 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 4 years ago