SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z
☆37Feb 26, 2023Updated 3 years ago
Alternatives and similar repositories for SCAPP
Users that are interested in SCAPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- snapper☆13Jul 8, 2024Updated last year
- ☆27Jun 20, 2023Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Sep 4, 2017Updated 8 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated last week
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆27Nov 20, 2023Updated 2 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆72Mar 16, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆127Oct 30, 2023Updated 2 years ago
- ☆15May 21, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆25Nov 3, 2025Updated 7 months ago
- Plasmid analysis using rearrangement distances☆55May 28, 2026Updated last week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆152Apr 5, 2026Updated 2 months ago
- ☆60May 11, 2026Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- ☆35Apr 15, 2024Updated 2 years ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Aug 15, 2025Updated 9 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Apr 10, 2026Updated 2 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆305Feb 3, 2026Updated 4 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Updated this week
- ☆33Jul 14, 2021Updated 4 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆175Apr 16, 2025Updated last year
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- BSR-Based Allele Calling Algorithm☆150Updated this week
- A tool for removing redundant genomes from a set of assemblies☆81May 6, 2026Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated last year
- ☆102Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆221May 9, 2026Updated last month
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year