cultivarium / GenomeSPOT
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
☆48Updated last month
Alternatives and similar repositories for GenomeSPOT:
Users that are interested in GenomeSPOT are comparing it to the libraries listed below
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆61Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- ☆38Updated last week
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 3 weeks ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last week
- PaperBLAST: find papers about a protein or its homologs☆39Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆35Updated 8 months ago
- PHANOTATE: a gene caller for phages.☆74Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆80Updated 5 months ago
- ☆70Updated this week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆20Updated 2 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆134Updated 2 weeks ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Phage Annotation using Protein Structures☆104Updated 2 weeks ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Viral protein family functional prediction using protein language models☆19Updated 11 months ago
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 3 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 9 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆48Updated 3 months ago
- Local version of the virus identification and analysis web server (tool set)☆49Updated 3 weeks ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆48Updated 7 months ago