Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
☆70Mar 16, 2026Updated 2 months ago
Alternatives and similar repositories for GenomeSPOT
Users that are interested in GenomeSPOT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Jun 20, 2023Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 3 weeks ago
- ☆52Mar 29, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆18Nov 7, 2025Updated 6 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- ☆23Feb 7, 2022Updated 4 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆162Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Apr 22, 2026Updated last month
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated last month
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 6 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated 2 months ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 5 months ago
- ☆46Jun 27, 2023Updated 2 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆29Updated this week
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 6 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 9 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆106Jun 25, 2023Updated 2 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- sensitive and precise assembly of short sequencing reads☆167Oct 11, 2024Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆177Apr 6, 2026Updated last month
- A comprehensive prokaryotic genome annotation pipeline☆87Updated this week
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 6 months ago
- Similarity networks of biosynthetic gene clusters☆168Apr 1, 2026Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- Automatic eukaryotic taxonomic classification☆31May 9, 2025Updated last year
- ☆14Sep 2, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- ☆21Mar 15, 2023Updated 3 years ago
- ☆11Jun 3, 2025Updated 11 months ago
- PaperBLAST: find papers about a protein or its homologs☆52Apr 10, 2026Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆83Mar 2, 2023Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆41Feb 9, 2022Updated 4 years ago