cultivarium / GenomeSPOTLinks
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
☆57Updated 6 months ago
Alternatives and similar repositories for GenomeSPOT
Users that are interested in GenomeSPOT are comparing it to the libraries listed below
Sorting:
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆72Updated 5 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆48Updated 9 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated this week
- ☆21Updated 3 months ago
- Phage Annotation using Protein Structures☆128Updated 3 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆97Updated 4 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆124Updated last month
- Pipeline for major biological analyses.☆35Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- ☆41Updated 4 months ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated 3 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 8 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆149Updated 3 weeks ago
- Find clustered hits from a BLAST search☆121Updated 10 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- ☆31Updated 9 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 7 months ago
- Systematic search of all known anti-phage systems.☆119Updated last week
- Locate antiviral defence systems in prokaryotic genomes☆64Updated 11 months ago
- Similarity networks of biosynthetic gene clusters☆130Updated last week
- Detection of phage RBPs based on protein domains and machine learning☆25Updated 8 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago