Alternatives and similar repositories for GenomeSPOT:

Users that are interested in GenomeSPOT are comparing it to the libraries listed below

• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆31Updated last year
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 7 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆25Updated 2 weeks ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆40Updated 2 months ago
• EBI-Metagenomics / mettannotator
  ☆67Updated last week
• kelwyres / Bactabolize
  ☆38Updated 3 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆34Updated 6 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆37Updated 2 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆39Updated last month
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆46Updated last month
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆54Updated 7 months ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆61Updated 4 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆59Updated 3 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆130Updated last week
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆72Updated 3 months ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 9 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆64Updated this week
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆53Updated last week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆78Updated 3 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆32Updated 2 weeks ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• medema-group / BiG-MAP
  ☆29Updated 3 weeks ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆12Updated 5 months ago
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆14Updated 2 months ago
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆18Updated this week