Alternatives and similar repositories for GenomeSPOT

Users that are interested in GenomeSPOT are comparing it to the libraries listed below

• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆38Updated last year
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆92Updated 5 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆76Updated 9 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 4 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆121Updated last week
• chevrettelab / gator-gc
  ☆21Updated 6 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 7 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆141Updated this week
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆51Updated last year
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated 3 weeks ago
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆82Updated 2 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆30Updated 9 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆36Updated 3 years ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆159Updated 2 weeks ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆25Updated 2 years ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆40Updated 3 months ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆24Updated 3 years ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆21Updated 2 weeks ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆50Updated last month
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆30Updated 5 months ago
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆28Updated 2 weeks ago
• kelwyres / Bactabolize
  ☆42Updated 7 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆163Updated last year
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆18Updated 3 years ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆53Updated 2 years ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 4 years ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆130Updated this week
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆106Updated last year
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 3 years ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆149Updated last week