Alternatives and similar repositories for GenomeSPOT

Users that are interested in GenomeSPOT are comparing it to the libraries listed below

• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆85Updated last month
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆71Updated 5 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 3 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆34Updated last year
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆64Updated last month
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆126Updated this week
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆47Updated 8 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆28Updated 5 months ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆75Updated 3 months ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 2 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 3 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆84Updated 4 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 5 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆45Updated 3 weeks ago
• padlocbio / padloc
  Locate antiviral defence systems in prokaryotic genomes
  ☆61Updated 10 months ago
• chevrettelab / gator-gc
  ☆21Updated 2 months ago
• mdmparis / defense-finder-models
  MacSyFinder models allowing for a systematic search of anti-phage systems
  ☆22Updated 7 months ago
• kelwyres / Bactabolize
  ☆39Updated 3 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆146Updated this week
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆118Updated 3 weeks ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆51Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆20Updated last year
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆14Updated 3 weeks ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated last month
• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆24Updated 7 months ago
• BackofenLab / CRISPRidentify
  ☆30Updated 8 months ago