cultivarium / GenomeSPOTLinks
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
☆56Updated 4 months ago
Alternatives and similar repositories for GenomeSPOT
Users that are interested in GenomeSPOT are comparing it to the libraries listed below
Sorting:
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆83Updated 8 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 8 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆44Updated 7 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆70Updated 3 months ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 2 months ago
- ☆21Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 4 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- Phage Annotation using Protein Structures☆115Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆71Updated last month
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆39Updated 2 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆42Updated last week
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 6 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆17Updated 3 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆147Updated this week
- Similarity networks of biosynthetic gene clusters☆123Updated last week
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Find clustered hits from a BLAST search☆120Updated 8 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Systematic search of all known anti-phage systems.☆111Updated last month
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Viral protein family functional prediction using protein language models☆19Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago