Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
☆69Mar 16, 2026Updated 5 months ago
Alternatives and similar repositories for GenomeSPOT
Users that are interested in GenomeSPOT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Sep 1, 2026Updated last week
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 10 months ago
- ☆25Feb 7, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 3 years ago
- ☆19Nov 7, 2025Updated 10 months ago
- ☆57Mar 29, 2026Updated 5 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last month
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated last week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆66Apr 22, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated 2 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 5 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Aug 24, 2026Updated 2 weeks ago
- ☆47Jun 27, 2023Updated 3 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 10 months ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆182Jul 22, 2026Updated last month
- sensitive and precise assembly of short sequencing reads☆170Oct 11, 2024Updated last year
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆22Aug 24, 2026Updated 2 weeks ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆31Jan 12, 2026Updated 7 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆76Dec 28, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- A comprehensive prokaryotic genome annotation pipeline☆93Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Jul 7, 2026Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆42Feb 9, 2022Updated 4 years ago
- PaperBLAST: find papers about a protein or its homologs☆53Aug 31, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆277Mar 20, 2025Updated last year