a pipeline to cluster proteins into families
☆10Apr 1, 2020Updated 6 years ago
Alternatives and similar repositories for proteinClusteringPipeline
Users that are interested in proteinClusteringPipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Feb 7, 2022Updated 4 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 8 years ago
- ☆47Jun 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- Rapid & standardized genome annotation using protein structural information☆73Jul 2, 2026Updated last month
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 30, 2026Updated 2 weeks ago
- Nail is an Alignment Inference tooL☆64Aug 1, 2026Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 5 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆58Oct 11, 2022Updated 3 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Nov 6, 2024Updated last year
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆17Jul 27, 2026Updated 2 weeks ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆23Jul 11, 2026Updated last month
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- ☆19May 7, 2026Updated 3 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated 3 months ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 6 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Updated this week
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated last month
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆83Jun 17, 2024Updated 2 years ago
- ☆13Nov 12, 2025Updated 9 months ago
- Simple terminal alignment viewer☆89Apr 23, 2026Updated 3 months ago