Tools to analyze the differences and similarities between CRISPR arrays
☆11Dec 17, 2024Updated last year
Alternatives and similar repositories for CRISPR_comparison_toolkit
Users that are interested in CRISPR_comparison_toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 5 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 5 years ago
- ☆24Feb 7, 2022Updated 4 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Feb 25, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Apr 11, 2023Updated 3 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆15Nov 20, 2025Updated 8 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 4 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆26Feb 23, 2026Updated 5 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆14Mar 12, 2026Updated 4 months ago
- Extended ComplexHeatmap☆12Jan 5, 2025Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 5 months ago
- Large scale Blast Score Ratio (BSR) analysis☆36Nov 18, 2025Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Systematic search of all known anti-phage systems.☆178May 5, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated 2 months ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Jul 1, 2026Updated 3 weeks ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 3 years ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ☆33Dec 28, 2024Updated last year
- Bioinformatics Tools☆91Updated this week
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- Faster FASTA and FASTQ file processing command line tool - parsing, sorting, deduplication, transliteration, filter, and stats☆22Jun 15, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Mar 29, 2025Updated last year
- U-Net TF2☆14Jun 13, 2020Updated 6 years ago
- The viral taxonomic assignment pipeline☆45Apr 16, 2026Updated 3 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆92May 7, 2025Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆110Feb 15, 2024Updated 2 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30May 26, 2026Updated last month
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆55Mar 2, 2026Updated 4 months ago