Tools to analyze the differences and similarities between CRISPR arrays
☆11Dec 17, 2024Updated last year
Alternatives and similar repositories for CRISPR_comparison_toolkit
Users that are interested in CRISPR_comparison_toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 4 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated 10 months ago
- ☆23Feb 7, 2022Updated 4 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Feb 25, 2023Updated 3 years ago
- ☆16Apr 11, 2023Updated 2 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆22Feb 23, 2026Updated last month
- ☆21Mar 15, 2023Updated 3 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆13Nov 20, 2025Updated 4 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- Mining CRISPRs in Environmental Datasets☆120Feb 10, 2023Updated 3 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25Feb 7, 2025Updated last year
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated last month
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last week
- Extended ComplexHeatmap☆11Jan 5, 2025Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆82Mar 12, 2026Updated last week
- Large scale Blast Score Ratio (BSR) analysis☆37Nov 18, 2025Updated 4 months ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆13Mar 22, 2025Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- ☆31Dec 28, 2024Updated last year
- Plasmid analysis using rearrangement distances☆50Mar 12, 2026Updated last week
- ☆10Mar 29, 2025Updated 11 months ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 2 years ago
- Bioinformatics Tools☆90Mar 16, 2026Updated last week
- U-Net TF2☆14Jun 13, 2020Updated 5 years ago
- ☆33Apr 15, 2024Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Updated this week
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆107Feb 15, 2024Updated 2 years ago