Alan-Collins / CRISPR_comparison_toolkit
Tools to analyze the differences and similarities between CRISPR arrays
☆9Updated last month
Alternatives and similar repositories for CRISPR_comparison_toolkit:
Users that are interested in CRISPR_comparison_toolkit are comparing it to the libraries listed below
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- ☆25Updated 11 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆28Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- ☆31Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- ☆16Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆21Updated last year
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- ☆28Updated last year
- ☆24Updated 6 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 2 months ago
- IslandPath standalone software☆31Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago