Alan-Collins / CRISPR_comparison_toolkitLinks
Tools to analyze the differences and similarities between CRISPR arrays
☆10Updated 5 months ago
Alternatives and similar repositories for CRISPR_comparison_toolkit
Users that are interested in CRISPR_comparison_toolkit are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- ☆24Updated 6 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- ☆32Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- ☆16Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Prophage Activity Estimator☆26Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆64Updated 2 weeks ago
- ☆35Updated last year
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- ☆32Updated 3 months ago
- Discover and annotate the virome☆42Updated last month
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆14Updated 9 months ago
- ☆20Updated 9 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- ☆25Updated last year