☆47Jun 27, 2023Updated 3 years ago
Alternatives and similar repositories for agnostos-wf
Users that are interested in agnostos-wf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 30, 2026Updated 2 weeks ago
- ☆24Feb 7, 2022Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- ☆56May 5, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆42Feb 9, 2022Updated 4 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- MGnify API toolkit☆18Jan 31, 2025Updated last year
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆11May 17, 2024Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆31May 7, 2026Updated 3 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- GEne Cluster prediction with COnditional random fields.☆87Jul 29, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 8 months ago
- GraftM - Rapid community profiles from metagenomes☆56Nov 6, 2025Updated 9 months ago
- MiGA: Microbial Genomes Atlas☆33Aug 7, 2026Updated last week
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆52May 5, 2026Updated 3 months ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 5 months ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 6 months ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- A tool to assemble high-quality phages from metagenomes.☆23May 22, 2026Updated 2 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 9 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆83Jun 17, 2024Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆102Aug 11, 2025Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated last week
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago