☆46Jun 27, 2023Updated 2 years ago
Alternatives and similar repositories for agnostos-wf
Users that are interested in agnostos-wf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 7, 2026Updated 2 weeks ago
- ☆23Feb 7, 2022Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆31May 9, 2025Updated last year
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 4 months ago
- ☆55May 5, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated 2 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆41Feb 9, 2022Updated 4 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated 2 months ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Differential analysis of multi-omics data based on the Tweedie distribution☆30May 7, 2026Updated 2 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆187Mar 17, 2026Updated 2 months ago
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated last month
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 6 months ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆52Nov 6, 2025Updated 6 months ago
- MiGA: Microbial Genomes Atlas☆33May 20, 2026Updated last week
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 3 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated last month
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 3 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆70Mar 16, 2026Updated 2 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 6 months ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆206Aug 25, 2025Updated 9 months ago
- Discover and annotate the virome☆63Feb 11, 2026Updated 3 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆100Aug 11, 2025Updated 9 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago