HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
☆10Apr 22, 2024Updated 2 years ago
Alternatives and similar repositories for HOTSPOT
Users that are interested in HOTSPOT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- ☆35Apr 15, 2024Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated last month
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated 2 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- ☆23Feb 7, 2022Updated 4 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆17Nov 6, 2024Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated last month
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- ☆13Sep 4, 2017Updated 8 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 9 months ago
- ARGpore2☆13Sep 12, 2024Updated last year
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Aug 28, 2024Updated last year
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- A viral haplotype reconstruction tool for long reads.☆14Mar 2, 2024Updated 2 years ago
- Host prediction for phages☆27Nov 6, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- ☆10Mar 29, 2025Updated last year
- ☆18May 13, 2021Updated 4 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 2 months ago
- ☆25Apr 20, 2023Updated 3 years ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 3 weeks ago
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated last week
- UHCA☆11Jan 23, 2025Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Aug 13, 2024Updated last year
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- ☆20Apr 24, 2025Updated last year