Metagenomic search for novel CRISPR-transposons
☆12Sep 30, 2021Updated 5 years ago
Alternatives and similar repositories for Metagenomics_CAST
Users that are interested in Metagenomics_CAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- ☆26Feb 7, 2022Updated 4 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- 🎨 Python library to plot multi-part genetic constructs☆27Apr 9, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- Software for predicting translation initiation rates in bacteria☆34Sep 21, 2026Updated 3 weeks ago
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Jan 29, 2024Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- ☆33Jul 27, 2026Updated 2 months ago
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆32Apr 9, 2025Updated last year
- Generalizable Cas9/sgRNA prediction models for multiple Cas9 variants☆11May 4, 2026Updated 5 months ago
- ApE- A plasmid Editor☆15Jan 12, 2022Updated 4 years ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆27Feb 13, 2025Updated last year
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆106Jul 11, 2023Updated 3 years ago
- A simple django based inventory control system designed to meet government organizations needs.☆13Feb 16, 2011Updated 15 years ago
- A deliberately simple Django app for managing IT inventory☆13Jul 14, 2016Updated 10 years ago
- simple and not slow ORF caller☆24Apr 7, 2026Updated 6 months ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆11Apr 28, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Nov 6, 2024Updated last year
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- Visualize your contributions on GitHub☆22Jan 10, 2021Updated 5 years ago
- Deprecated: please use GillesPy2☆12Oct 15, 2019Updated 7 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- Single-sequence protein-RNA complex structure prediction with biological language models☆18Sep 23, 2025Updated last year
- ☆33Jun 1, 2024Updated 2 years ago
- This repo contains source code and datasets used in code for Deep transfer learning enables lesion tracing of circulating tumor cells(CTC…☆12Jun 26, 2023Updated 3 years ago
- Mining CRISPRs in Environmental Datasets☆128Feb 10, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Snakemake workflow for somatic mutation detection without matched normal samples☆14Mar 4, 2023Updated 3 years ago
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆27Apr 22, 2020Updated 6 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 6 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- ☆16Oct 7, 2025Updated last year
- ☆11May 3, 2017Updated 9 years ago