wilkelab / Opfi
A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
☆21Updated 3 years ago
Alternatives and similar repositories for Opfi:
Users that are interested in Opfi are comparing it to the libraries listed below
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated 2 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 7 months ago
- ☆19Updated 3 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- ☆29Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- ☆17Updated 2 years ago
- ☆27Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 2 months ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- ☆31Updated last year
- Prophage Activity Estimator☆26Updated 9 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated last week
- ☆31Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 5 months ago
- HMmer Based UndeRstandinG of gene clustERs☆14Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆46Updated last month
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆27Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆38Updated 3 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year