A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
☆21Oct 26, 2021Updated 4 years ago
Alternatives and similar repositories for Opfi
Users that are interested in Opfi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- ☆25Feb 7, 2022Updated 4 years ago
- ☆11May 3, 2017Updated 9 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆22Aug 13, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆19Aug 7, 2026Updated last month
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 7 months ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- 🎨 Python library to plot multi-part genetic constructs☆27Apr 9, 2025Updated last year
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 11 months ago
- ☆16Apr 11, 2023Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆38May 21, 2024Updated 2 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 6 months ago
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 3 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Feb 22, 2022Updated 4 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Bash script for promoter sequences extraction☆16Aug 7, 2018Updated 8 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆31Mar 25, 2023Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆43Feb 9, 2022Updated 4 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14Updated this week
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 11, 2026Updated last week
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A script for comparing old vs new versions of genome annotations☆24Aug 1, 2023Updated 3 years ago
- R Markdown YAML metadata (header) tutorial with examples☆15Jun 11, 2021Updated 5 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆103Aug 11, 2025Updated last year
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆32Nov 11, 2019Updated 6 years ago