wilkelab / OpfiLinks
A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
☆21Updated 3 years ago
Alternatives and similar repositories for Opfi
Users that are interested in Opfi are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 9 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 7 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated last month
- ☆39Updated 3 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 5 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- ☆45Updated 2 years ago
- ☆11Updated 6 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- ☆30Updated 3 weeks ago
- ☆30Updated 8 months ago
- ☆17Updated 3 years ago
- PHANOTATE: a gene caller for phages.☆77Updated 9 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- ☆21Updated 3 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- A package to annotate protein sequences☆59Updated 6 months ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated this week
- metabolic heatmap☆21Updated 6 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 3 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- ☆31Updated 7 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 9 months ago