mdmparis / defense-finder-models
MacSyFinder models allowing for a systematic search of anti-phage systems
☆20Updated 6 months ago
Alternatives and similar repositories for defense-finder-models:
Users that are interested in defense-finder-models are comparing it to the libraries listed below
- Pipeline for major biological analyses.☆34Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- ☆37Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆28Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆33Updated 3 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 10 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- ☆25Updated 11 months ago
- ☆44Updated last year
- Tools to analyze the differences and similarities between CRISPR arrays☆9Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 3 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆12Updated 3 years ago
- ☆31Updated last year
- ☆18Updated 2 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated 8 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆43Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated 9 months ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 4 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- PHANOTATE: a tool to annotate phage genomes.☆71Updated last month
- Prophage Activity Estimator☆26Updated 7 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 3 weeks ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- ☆28Updated 10 months ago