mdmparis / defense-finder-models
MacSyFinder models allowing for a systematic search of anti-phage systems
☆21Updated last week
Alternatives and similar repositories for defense-finder-models:
Users that are interested in defense-finder-models are comparing it to the libraries listed below
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆39Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated this week
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆37Updated 3 months ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- ☆44Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated last month
- ☆31Updated last year
- ☆19Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- ☆19Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated last month
- Tools to analyze the differences and similarities between CRISPR arrays☆9Updated last month
- Prophage Activity Estimator☆26Updated 8 months ago
- ☆27Updated this week
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 4 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 4 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- Unified Human Gut Virome Catalog☆27Updated 6 months ago
- ☆37Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 7 months ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 2 months ago