MacSyFinder models allowing for a systematic search of anti-phage systems
☆28May 14, 2026Updated 5 months ago
Alternatives and similar repositories for defense-finder-models
Users that are interested in defense-finder-models are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- ☆26Feb 7, 2022Updated 4 years ago
- Locate antiviral defence systems in prokaryotic genomes☆78Oct 22, 2024Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆81Dec 22, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 7 years ago
- Hydrocarbon biodegradation gene annotation☆20Jul 14, 2022Updated 4 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Structural Analysis Toolkit - A python package for manipulation of structural data and structural alignments.☆11Jun 20, 2024Updated 2 years ago
- ☆15Oct 14, 2023Updated 3 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆20Nov 6, 2024Updated 2 years ago
- Repository for GreeningLab metabolic marker gene databases☆15May 28, 2026Updated 5 months ago
- Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes …☆24Oct 29, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- Phage Annotation Workshop 2021☆14Dec 6, 2021Updated 4 years ago
- ☆31Aug 29, 2024Updated 2 years ago
- Local version of the virus identification and analysis web server (tool set)☆123Oct 13, 2026Updated 3 weeks ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- ☆65Oct 28, 2026Updated last week
- CRISPR-Cas systems models for MacSyFinder☆10Dec 5, 2025Updated 11 months ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆60Apr 27, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 5 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- Genome browser for thousands of representative bacteria and archaea☆12Sep 8, 2026Updated last month
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆13May 28, 2021Updated 5 years ago
- Integrative virome pipeline☆14Nov 4, 2024Updated 2 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Host prediction for phages☆29Nov 6, 2024Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 5 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- ☆33Jul 16, 2023Updated 3 years ago
- ☆53May 29, 2026Updated 5 months ago