MacSyFinder models allowing for a systematic search of anti-phage systems
☆25Feb 7, 2025Updated last year
Alternatives and similar repositories for defense-finder-models
Users that are interested in defense-finder-models are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Systematic search of all known anti-phage systems.☆152Apr 2, 2026Updated 2 weeks ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆38Dec 17, 2025Updated 4 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆74Dec 22, 2025Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆16Nov 6, 2024Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated 2 weeks ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Aug 28, 2024Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 6 months ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- ☆25Jun 20, 2023Updated 2 years ago
- ☆49Mar 13, 2024Updated 2 years ago
- Locate antiviral defence systems in prokaryotic genomes☆72Oct 22, 2024Updated last year
- ☆10Mar 29, 2025Updated last year
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- ☆46Jun 27, 2023Updated 2 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 5 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- ☆15Oct 14, 2023Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 2 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated 11 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 4 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago