mdmparis / defense-finder-modelsLinks
MacSyFinder models allowing for a systematic search of anti-phage systems
☆22Updated 8 months ago
Alternatives and similar repositories for defense-finder-models
Users that are interested in defense-finder-models are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆35Updated last year
- ☆41Updated 4 months ago
- ☆21Updated 3 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 7 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆74Updated 6 months ago
- ☆21Updated 3 years ago
- Locate antiviral defence systems in prokaryotic genomes☆64Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆67Updated 3 weeks ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆23Updated last month
- ☆45Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last month
- PHANOTATE: a gene caller for phages.☆78Updated 10 months ago
- metabolic heatmap☆21Updated 6 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆91Updated 5 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
- This is a repository for CAMPER.☆15Updated last year
- ☆31Updated 3 weeks ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 6 months ago
- Viral protein family functional prediction using protein language models☆21Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆44Updated 6 months ago