WrightonLabCSU / CAMPERLinks
This is a repository for CAMPER.
☆16Updated last year
Alternatives and similar repositories for CAMPER
Users that are interested in CAMPER are comparing it to the libraries listed below
Sorting:
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 3 months ago
- ☆22Updated 4 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- ☆17Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated 3 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Scripts for calculating features and regression of prokaryote OGT☆25Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- Prophage Activity Estimator☆31Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Updated 2 years ago
- ☆26Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 8 months ago
- ☆43Updated 7 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆26Updated 8 months ago
- Population genomics from metagenomes☆12Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- The viral taxonomic assignment pipeline☆42Updated last month
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- ☆14Updated 4 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Updated 2 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 3 weeks ago
- ☆45Updated 2 years ago