WrightonLabCSU / CAMPER
This is a repository for CAMPER.
☆12Updated 10 months ago
Alternatives and similar repositories for CAMPER:
Users that are interested in CAMPER are comparing it to the libraries listed below
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 6 months ago
- ☆18Updated 2 years ago
- Metabolic scanning and annotation of Metagenomes☆10Updated 3 weeks ago
- ☆25Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 2 months ago
- ☆16Updated last month
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 3 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆22Updated 3 weeks ago
- Population genomics from metagenomes☆11Updated 4 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 10 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Prophage Activity Estimator☆26Updated 7 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated 8 months ago
- KEGG Module Evaluation Tool☆27Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- A Shiny app for taxonomic abundance visualization☆7Updated 8 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆16Updated this week
- A functional profiler for metagenomes using FracMinHash☆14Updated last month
- HMmer Based UndeRstandinG of gene clustERs☆14Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated last month
- MAG Circularization Method☆33Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated last year
- scripts for microbiome analysis☆11Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆20Updated last week
- MAGScoT - a MAG scoring and refinement tool☆31Updated 3 months ago
- ☆37Updated last month