A taxonomic classifier of plasmids
☆29Jul 7, 2021Updated 5 years ago
Alternatives and similar repositories for COPLA
Users that are interested in COPLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 11, 2026Updated last week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 2 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- ☆10Jun 9, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Sep 4, 2026Updated 2 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- whole genome MLST analysis☆56Jun 17, 2026Updated 3 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A curated database of completed assemblies with taxonomy IDs☆53Aug 31, 2026Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆184Apr 16, 2025Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Sep 9, 2026Updated last week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Aug 11, 2026Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 2 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 2 months ago
- ☆13Sep 4, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 4 months ago
- SeqSero2☆41Oct 1, 2025Updated 11 months ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆43Feb 9, 2022Updated 4 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 7 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆41Oct 23, 2024Updated last year
- ☆30Aug 2, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 2 months ago
- Split k-mer analysis – version 2☆106Jul 9, 2026Updated 2 months ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- ☆25Feb 7, 2022Updated 4 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago