MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
☆12Aug 26, 2026Updated last week
Alternatives and similar repositories for MetaCC
Users that are interested in MetaCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆19Feb 3, 2026Updated 7 months ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 10 months ago
- ☆25Feb 7, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆37Apr 10, 2026Updated 4 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆38Feb 26, 2023Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- A Survey of Canteen Desserts at Institut Pasteur☆12Nov 18, 2022Updated 3 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆13Jul 6, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆83Aug 23, 2026Updated 2 weeks ago
- ☆21Oct 23, 2025Updated 10 months ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Jul 1, 2026Updated 2 months ago
- snapper☆14Jul 8, 2024Updated 2 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 10 months ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- ☆36Aug 7, 2026Updated last month
- ☆16Aug 1, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Aug 6, 2026Updated last month
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Command line client for figshare☆19Jul 3, 2014Updated 12 years ago
- Lightweight (<3KB) vue library offering context-sensitive suggestions in your textareas☆19Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆277Mar 20, 2025Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 7 months ago
- Command-line program to export Polar RCX5 training sessions or upload them to Strava☆17Aug 30, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆229May 9, 2026Updated 3 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 30, 2026Updated last month
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Mar 25, 2026Updated 5 months ago
- Rapid comparison and dereplication of genomes☆354Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year