mennodejong1986 / SambaRLinks
SambaR: Snp datA Management and Basic Analyses in R
☆28Updated last month
Alternatives and similar repositories for SambaR
Users that are interested in SambaR are comparing it to the libraries listed below
Sorting:
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- MSMC2 Scripts☆24Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 weeks ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- ☆19Updated 2 years ago
- ☆26Updated last year
- ☆18Updated last year
- Tutorials on evolutionary genomics☆44Updated 3 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 7 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Sex assignment through coverage☆18Updated 2 weeks ago
- Repository for speciation genomics website☆25Updated 10 months ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- Presentations from the course☆37Updated last year
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- ☆39Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆52Updated 4 months ago
- DFOIL: Introgression Testing for Five Taxa☆32Updated 4 years ago