SambaR: Snp datA Management and Basic Analyses in R
☆33Jul 9, 2026Updated 3 months ago
Alternatives and similar repositories for SambaR
Users that are interested in SambaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian analysis of hybrids☆12Feb 19, 2019Updated 7 years ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- ☆22Sep 30, 2026Updated last month
- On synteny plots, intrinsic tangledness is real, layout tangledness is noise. This tool is for removing layout tangledness.☆22Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Mar 7, 2021Updated 5 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- ORTHOSKIM allows in silico capture of targeted sequences in genomic or transcriptomic libraries.☆10Apr 7, 2025Updated last year
- Tutorial about R package PopGenome☆44Mar 1, 2019Updated 7 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 7 years ago
- Feature-aware Directed OrtholoG search☆14Sep 16, 2026Updated last month
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- Presentations from the course☆40Aug 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Jan 6, 2022Updated 4 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 9 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 6 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated 2 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 11 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆76Jul 31, 2026Updated 2 months ago
- Files and scripts for generating customised, tailored target files for target-capture analyses.☆10Mar 30, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated 2 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- General tools for genomic analyses.☆398Mar 25, 2026Updated 7 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆24Oct 28, 2025Updated last year
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Mar 24, 2020Updated 6 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- ☆49Sep 5, 2023Updated 3 years ago
- Taller para estudiantes de pregrado o postgrado cuyo objetivo principal o secundario involucre estudios genómicos☆28Aug 7, 2024Updated 2 years ago
- "Archaeogenetics analysis of Anatolia"☆14Jan 27, 2021Updated 5 years ago
- ☆21Feb 24, 2023Updated 3 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 6 months ago
- ☆14Aug 13, 2026Updated 2 months ago