SambaR: Snp datA Management and Basic Analyses in R
☆33Jul 9, 2026Updated last month
Alternatives and similar repositories for SambaR
Users that are interested in SambaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- ☆22Updated this week
- ☆14Mar 7, 2021Updated 5 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Feature-aware Directed OrtholoG search☆14Jul 21, 2026Updated 3 weeks ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 6 months ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Jul 17, 2026Updated 3 weeks ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆22Oct 28, 2025Updated 9 months ago
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆49Sep 5, 2023Updated 2 years ago
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 7 months ago
- ☆14Mar 18, 2025Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- ☆38Apr 13, 2026Updated 3 months ago
- "Archaeogenetics analysis of Anatolia"☆14Jan 27, 2021Updated 5 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆48Mar 7, 2024Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated 2 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 4 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Presentations from the course☆40Aug 28, 2023Updated 2 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆76Jul 31, 2026Updated last week
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 6 months ago
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago