SambaR: Snp datA Management and Basic Analyses in R
☆32Oct 16, 2025Updated 6 months ago
Alternatives and similar repositories for SambaR
Users that are interested in SambaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Dec 30, 2025Updated 4 months ago
- ☆14Mar 7, 2021Updated 5 years ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 2 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Feature-aware Directed OrtholoG search☆14Mar 24, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 3 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆47Mar 7, 2024Updated 2 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Oct 28, 2025Updated 6 months ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 11 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆46Sep 5, 2023Updated 2 years ago
- ☆14Mar 18, 2025Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆70Feb 21, 2026Updated 2 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated last week
- ☆38Apr 13, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Apr 25, 2026Updated last week
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆54Jul 18, 2018Updated 7 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- "Archaeogenetics analysis of Anatolia"☆14Jan 27, 2021Updated 5 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Presentations from the course☆39Aug 28, 2023Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated last month
- R package for comparison of synteny conservation at the genome-wide scale.☆15Jun 6, 2024Updated last year
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Feb 19, 2026Updated 2 months ago