trevorcousins / cobraa
cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequence.
☆12Updated last month
Alternatives and similar repositories for cobraa:
Users that are interested in cobraa are comparing it to the libraries listed below
- Sampling and inference of genealogies with recombination☆29Updated 6 months ago
- machine learning applications for dadi☆14Updated 2 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆14Updated this week
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆11Updated 6 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Automated and distributed population genetic model inference from allele frequency spectra☆15Updated last week
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆30Updated 5 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Deleterious mutation prediction pipeline☆13Updated 3 months ago
- ☆13Updated 4 years ago
- ☆20Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Sex assignment through coverage☆17Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Infer demographic history with the Moran model☆47Updated last month
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 9 months ago
- ☆18Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- ☆28Updated 2 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆15Updated last year
- ☆23Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago