trevorcousins / cobraaLinks
cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequence.
☆21Updated 7 months ago
Alternatives and similar repositories for cobraa
Users that are interested in cobraa are comparing it to the libraries listed below
Sorting:
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Tools and Utilities for msmc and msmc2☆50Updated last week
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- ☆45Updated 3 months ago
- Sampling and inference of genealogies with recombination☆50Updated 7 months ago
- ☆13Updated 4 years ago
- ☆24Updated 8 years ago
- ☆35Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- ☆26Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆42Updated last year
- GONE: Scripts, programs and an example data set☆51Updated 6 months ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- ☆54Updated 7 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Updated 2 years ago
- ARG-based inference of selection using deep learning☆17Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- Topology weighting from unphased genotypes of any ploidy☆20Updated last month
- A software package for local ancestry inference and haplotype phasing☆45Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Automated pipeline for running CoalHMM☆13Updated 3 weeks ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 6 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago