trevorcousins / cobraaLinks
cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequence.
☆21Updated 2 months ago
Alternatives and similar repositories for cobraa
Users that are interested in cobraa are comparing it to the libraries listed below
Sorting:
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 11 months ago
- Infer demographic history with the Moran model☆48Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Tools and Utilities for msmc and msmc2☆48Updated 3 weeks ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 3 months ago
- ☆31Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- ☆24Updated 8 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- ☆37Updated last month
- Sampling and inference of genealogies with recombination☆32Updated 2 months ago
- ☆13Updated 4 years ago
- ☆36Updated last year
- ☆37Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆52Updated 2 months ago
- ☆29Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year