☆38Apr 8, 2022Updated 3 years ago
Alternatives and similar repositories for aTRAM
Users that are interested in aTRAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24May 30, 2023Updated 2 years ago
- spruceup☆25Aug 15, 2025Updated 7 months ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆32Mar 8, 2025Updated last year
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- ☆15Mar 20, 2023Updated 3 years ago
- ☆22Mar 25, 2014Updated 11 years ago
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 2 months ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆21Feb 5, 2023Updated 3 years ago
- Machuruku☆32Jan 20, 2025Updated last year
- Site Identification from Short Read Sequences.☆24Nov 2, 2021Updated 4 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 2 years ago
- ☆14Mar 18, 2025Updated last year
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Apr 25, 2024Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 5 months ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated last month
- ☆21Dec 30, 2025Updated 2 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Feb 12, 2025Updated last year
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- ☆13Apr 5, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆95Jun 5, 2025Updated 9 months ago
- Code for accurate inference of tree topologies from multiple sequence alignments using deep learning☆10Nov 3, 2019Updated 6 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Mar 4, 2024Updated 2 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Assign taxonomy with blast, can be used for qiime☆25Mar 25, 2025Updated 11 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 6 months ago