Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes
☆15May 29, 2024Updated 2 years ago
Alternatives and similar repositories for hPSMC
Users that are interested in hPSMC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated 2 years ago
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago
- Estimation of current effective population using artificial neural networks☆10Jan 4, 2026Updated 9 months ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- ☆22Jan 11, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆24Jun 9, 2017Updated 9 years ago
- msstats calculates many common popgen summary statistics from the output of the coalescent simulation "ms".☆10Jun 8, 2018Updated 8 years ago
- Bayesian analysis of hybrids☆12Feb 19, 2019Updated 7 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆26Jun 17, 2025Updated last year
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Mar 20, 2023Updated 3 years ago
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆32Oct 27, 2026Updated last week
- Ascertained Sequentially Markovian Coalescent☆19Oct 23, 2026Updated last week
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- Materials for the INF 515: Comparative Genomics course at NAU taught by Prof. Marc Tollis☆15Sep 21, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- command-line tools for the management of genotype likelihoods and allele counts☆30Jun 17, 2026Updated 4 months ago
- Genome Analysis Workshop (Jena 2016) material☆18Aug 14, 2026Updated 2 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 3 years ago
- ☆13Sep 11, 2025Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Bayesian reconstruction of ancient DNA fragments☆31Oct 21, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 9 months ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- ☆22Sep 30, 2026Updated last month
- Genetic Algorithm for Demographic Model Analysis☆60Feb 3, 2026Updated 8 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago