Alternatives and similar repositories for ParalogWizard

Users that are interested in ParalogWizard are comparing it to the libraries listed below

• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆20Updated 2 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 5 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆54Updated 5 months ago
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆19Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated last month
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 3 years ago
• BenjaminPeter / rangeexpansion
  ☆14Updated 8 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆55Updated 3 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated 11 months ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆17Updated 2 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 5 months ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆17Updated last week
• z0on / RDA-forest
  association analysis of distance matrices using gradient forest approach
  ☆16Updated 2 months ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆15Updated 2 years ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆52Updated last year
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated 2 years ago
• dportik / MonoPhylo
  A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.
  ☆10Updated last year
• sjoleary / SNPFILT
  ☆19Updated 7 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆61Updated 2 weeks ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆28Updated 2 months ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆35Updated 2 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆33Updated 4 years ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 4 months ago