Alternatives and similar repositories for ParalogWizard

Users that are interested in ParalogWizard are comparing it to the libraries listed below

• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆19Updated 2 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• esayyari / DiscoVista
  ☆40Updated last year
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆18Updated last year
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆49Updated last month
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆59Updated 8 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆29Updated last year
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated last year
• BenjaminPeter / rangeexpansion
  ☆13Updated 8 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆47Updated 7 months ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆26Updated 3 weeks ago
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆14Updated 6 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last week
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆16Updated 7 months ago
• clairemerot / angsd_pipeline
  ☆26Updated 2 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆33Updated 4 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆52Updated 2 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• edgardomortiz / paralog-finder
  Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
  ☆10Updated 5 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆16Updated 3 years ago
• mossmatters / MJPythonNotebooks
  Visualizing gene tree conflict using Phyparts, and ETE3
  ☆14Updated 2 years ago
• dportik / MonoPhylo
  A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.
  ☆10Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 11 months ago
• rbouckaert / starbeast3
  ☆18Updated 9 months ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆10Updated 2 years ago