☆14Mar 18, 2025Updated last year
Alternatives and similar repositories for ParalogWizard
Users that are interested in ParalogWizard are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated last month
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- ☆19Dec 5, 2020Updated 5 years ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆43Jul 14, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- spruceup☆25Aug 15, 2025Updated 11 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jun 2, 2026Updated last month
- Recovering genes from targeted sequence capture data☆135Jan 9, 2026Updated 6 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆126Apr 18, 2026Updated 3 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 8 months ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated 9 months ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 3 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 9 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Updated this week
- ☆48Sep 5, 2023Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Jul 5, 2026Updated 2 weeks ago
- ☆27Apr 14, 2021Updated 5 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24May 30, 2023Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 7 months ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆25Dec 6, 2025Updated 7 months ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆26Jun 16, 2021Updated 5 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- Functions for phylogenetic analyses☆36May 18, 2026Updated 2 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆33Jul 9, 2026Updated last week
- Species locality data + polygons -> nexus file.☆41Nov 11, 2019Updated 6 years ago
- instructor notes from Software Carpentry workshops☆10Jan 25, 2019Updated 7 years ago
- ☆10Sep 11, 2020Updated 5 years ago