☆13Mar 7, 2021Updated 4 years ago
Alternatives and similar repositories for balancing-selection
Users that are interested in balancing-selection are comparing it to the libraries listed below
Sorting:
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated 11 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 10 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- A Python package for landscape genomic simulation☆12Dec 15, 2025Updated 2 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 4 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Sep 2, 2021Updated 4 years ago
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".☆11Nov 19, 2015Updated 10 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Aug 21, 2018Updated 7 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 7 years ago
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Feb 7, 2026Updated 3 weeks ago
- ☆17Nov 19, 2021Updated 4 years ago
- ☆11Oct 23, 2019Updated 6 years ago
- Simulating Plasmodium Epidemiological and Genetic Data☆12Apr 3, 2023Updated 2 years ago
- ☆34Jan 14, 2026Updated last month
- feature-based deep learning for the identification of selective sweeps☆58Feb 7, 2026Updated 3 weeks ago
- ☆18May 27, 2022Updated 3 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆23Jun 17, 2025Updated 8 months ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 3 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago
- Rust bindings for the tskit library☆16Updated this week
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago