sdtemple / isweep
Statistical inference of recent positive selection using IBD segments
☆13Updated 2 months ago
Alternatives and similar repositories for isweep
Users that are interested in isweep are comparing it to the libraries listed below
Sorting:
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆13Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated last week
- Reference genome quality scores☆20Updated 4 years ago
- ☆20Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆39Updated 7 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆14Updated 2 weeks ago
- This is the Haplotypo repository☆20Updated 11 months ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆16Updated this week
- Sampling and inference of genealogies with recombination☆29Updated 7 months ago
- ☆20Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Transfer coordinates across genomes☆23Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆33Updated last month
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆13Updated 9 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- ☆20Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Consensus genome annotation using OMA☆24Updated last week
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 8 months ago
- ☆14Updated 2 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆27Updated last year
- Phasing reads with secondary alignments☆18Updated 5 months ago
- Bash scripts and data used in pantranscriptomic paper☆22Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- convert a blast output to a bed file☆12Updated 9 years ago