sdtemple / isweepLinks
Statistical inference of recent positive selection using IBD segments
☆14Updated last month
Alternatives and similar repositories for isweep
Users that are interested in isweep are comparing it to the libraries listed below
Sorting:
- Infering ancestral synteny with hierarchical orthologous groups☆35Updated last month
- ☆28Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆14Updated 4 months ago
- ☆18Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆41Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Computational Pangenomics☆17Updated 3 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 3 months ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Sampling and inference of genealogies with recombination☆46Updated 5 months ago
- SV genotyper for long reads with a variation graph☆13Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 weeks ago
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- ☆33Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago