bwringe / hybriddetective

Related projects: ⓘ

• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated this week
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• schellt / backmap
  Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
  ☆10Updated 2 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆15Updated 4 years ago
• GenisGE / evalAdmix
  ☆12Updated 4 months ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆16Updated 5 years ago
• schneebergerlab / GameteBinning
  ☆12Updated 3 years ago
• bpucker / MYB_annotator
  This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…
  ☆16Updated 2 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆15Updated 11 months ago
• novikovalab / piawka
  The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
  ☆21Updated last week
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated last year
• ChenHuaLab / Beta-PSMC
  ☆11Updated 4 years ago
• GonzalezLab / T-lex3
  ☆14Updated 4 years ago
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆12Updated 6 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated last month
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆19Updated last week
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆23Updated 5 months ago
• fgvieira / ngsF
  Estimation of per-individual inbreeding coefficients under a probabilistic framework
  ☆20Updated last year
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆10Updated last week
• arzwa / Beluga.jl
  Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
  ☆8Updated 3 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated last year
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆15Updated this week
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• CAFS-bioinformatics / P_RNA_scaffolder
  use paired-end transcriptome reads to scaffold genomes
  ☆10Updated 5 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆20Updated 3 years ago
• grenaud / vgan
  Suite of tools for pangenomics built using vg
  ☆17Updated last month