bwringe / hybriddetectiveLinks
☆14Updated 2 years ago
Alternatives and similar repositories for hybriddetective
Users that are interested in hybriddetective are comparing it to the libraries listed below
Sorting:
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- The MafFilter genome alignment processor☆19Updated 4 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 3 years ago
- ☆12Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆16Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 3 weeks ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated 2 years ago
- Programs for performing various population genetic analyses☆11Updated 10 months ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated last week
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated 2 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 weeks ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago