carolindahms / TreeMixLinks
Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates a consensus tree. It plots the maximum likelihood tree with bootstrap values, drift and residuals and calculates statistics for every migration event, such as migration support, standard error and p-values.
☆38Updated last year
Alternatives and similar repositories for TreeMix
Users that are interested in TreeMix are comparing it to the libraries listed below
Sorting:
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- ☆18Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 4 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆12Updated 6 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆31Updated 2 weeks ago
- ☆28Updated 2 years ago
- MSMC2 Scripts☆27Updated last month
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Sex assignment through coverage☆20Updated 5 months ago
- ☆32Updated 7 months ago
- GONE: Scripts, programs and an example data set☆47Updated 3 months ago
- ☆40Updated 2 years ago
- ☆16Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆53Updated 4 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆50Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- ☆17Updated 3 years ago
- ☆42Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆38Updated 3 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago