edgardomortiz / paralog-finderLinks
Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
☆10Updated 5 years ago
Alternatives and similar repositories for paralog-finder
Users that are interested in paralog-finder are comparing it to the libraries listed below
Sorting:
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- An R function to compute Concordance Factors from SNP datasets☆14Updated 6 months ago
- An R Package to build and simulate coalescent models☆20Updated last year
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆15Updated 3 months ago
- Population assignment analysis using R☆17Updated 2 months ago
- ☆39Updated last year
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- Scripts for file processing and analysis in phylogenetics and phylogeography☆12Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated 3 months ago
- Phylogenetic penalized likelihood☆48Updated 2 weeks ago
- UCE Bioinformatics Pipeline☆16Updated 6 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- ☆18Updated 7 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 11 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- ☆18Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- ☆18Updated 8 months ago
- ☆13Updated 7 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆40Updated 8 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- ☆26Updated last year
- Code for computing various support scores for internodes☆19Updated 5 years ago