ThibaultLeroyFr / Intro2PopGenomicsLinks
Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
☆21Updated 6 years ago
Alternatives and similar repositories for Intro2PopGenomics
Users that are interested in Intro2PopGenomics are comparing it to the libraries listed below
Sorting:
- Scripts for population genetics analysis☆20Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆21Updated last week
- Infer demographic history with the Moran model☆48Updated 4 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆38Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆67Updated last week
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- ☆18Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆31Updated 2 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- ☆19Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- ☆17Updated 3 years ago
- ☆24Updated 8 years ago
- ☆28Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆21Updated 4 years ago
- WinPCA. A package for windowed principal component analysis.☆38Updated 3 weeks ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- ☆53Updated 4 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago