Alternatives and similar repositories for Intro2PopGenomics

Users that are interested in Intro2PopGenomics are comparing it to the libraries listed below

• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆20Updated 3 weeks ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 weeks ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆14Updated 5 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 8 months ago
• zhangfumin / domestication
  ☆19Updated 2 years ago
• zjnolen / PopGLen
  Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…
  ☆12Updated last month
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 3 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆18Updated 2 weeks ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 3 months ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 6 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 weeks ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• conJUSTover / pSONIC
  The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).
  ☆21Updated 3 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated last year
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 4 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 10 months ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year