biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
☆67Feb 21, 2026Updated last week
Alternatives and similar repositories for biodiversity_genomics_course
Users that are interested in biodiversity_genomics_course are comparing it to the libraries listed below
Sorting:
- Accelerated Bayesian inference of population size history from whole genome data.☆33Sep 29, 2025Updated 5 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 8 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆226Jan 4, 2026Updated 2 months ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated last month
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆38Sep 14, 2025Updated 5 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 4 months ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 10 months ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- ☆18Jun 30, 2023Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆32Sep 11, 2025Updated 5 months ago
- ☆17Oct 21, 2024Updated last year
- a gap-filling tools of genome in complex region.☆24Dec 30, 2025Updated 2 months ago
- Neural network classification of TE☆97Oct 9, 2025Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆18Dec 5, 2020Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Jan 3, 2026Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆159Nov 4, 2025Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆43Jan 7, 2026Updated 2 months ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆44Mar 7, 2024Updated 2 years ago
- A program for assessing the T2T genome continuity☆93Feb 28, 2026Updated last week
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- Drawing functions for Demes demographic models☆24Updated this week
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Jun 14, 2024Updated last year
- PASA software☆197Feb 12, 2025Updated last year
- ☆16Jan 14, 2026Updated last month
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- ☆41Jun 8, 2023Updated 2 years ago