rapidspeciation / biodiversity_genomics_course
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
☆49Updated 2 months ago
Alternatives and similar repositories for biodiversity_genomics_course:
Users that are interested in biodiversity_genomics_course are comparing it to the libraries listed below
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated 2 weeks ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆65Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆43Updated 2 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆58Updated 6 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆39Updated 2 years ago
- Software for ancestry estimation in unrelated individuals☆18Updated 2 weeks ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Using ggtree to build phylogenetic trees☆46Updated 5 months ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Repository for speciation genomics website☆25Updated 9 months ago
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- Tutorials on evolutionary genomics☆43Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆47Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- ☆39Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- ☆31Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- Hybridization detection using phylogenetic invariants☆46Updated 5 months ago
- ☆18Updated 4 years ago
- Topology weighting by iterative sampling of sub-trees☆76Updated 3 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago