Alternatives and similar repositories for biodiversity_genomics_course

Users that are interested in biodiversity_genomics_course are comparing it to the libraries listed below

• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆89Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆60Updated last month
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last week
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆38Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆55Updated 3 years ago
• DessimozLab / OMArk
  ☆84Updated 3 weeks ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆49Updated 7 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆60Updated last week
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆36Updated 2 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆45Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆31Updated 7 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆75Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆65Updated 7 months ago
• harvardinformatics / degenotate
  ☆53Updated 6 months ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• jingwanglab / Populus_genomic_prediction_climate_vulnerability
  ☆43Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated last week
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆49Updated last year
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated 2 years ago
• vlothec / TRASH
  RepeatIdentifier
  ☆71Updated 9 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆86Updated last month