rapidspeciation / biodiversity_genomics_course
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
☆43Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for biodiversity_genomics_course
- ☆36Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated 3 weeks ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆54Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- Tutorial about R package PopGenome☆40Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- Repository for speciation genomics website☆24Updated 4 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆10Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆52Updated last month
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Tutorials on phylogenetic and phylogenomic inference☆38Updated 6 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆31Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆23Updated 8 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- ☆38Updated last year
- ☆25Updated this week
- Analysis of convergence between organismal traits and DNA/protein sequences☆46Updated 4 months ago
- paml documentation and tutorials☆47Updated last year
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- NLR-Annotator upload☆60Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆34Updated 6 months ago
- Using ggtree to build phylogenetic trees☆45Updated 2 weeks ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆26Updated 5 years ago
- Portable solution to generate genome alignment chains using lastz☆48Updated last month
- Tutorials on evolutionary genomics☆41Updated 2 years ago
- ☆61Updated 7 months ago