Alternatives and similar repositories for Populus-Genomic-Consequences-of-Hybridization:

Users that are interested in Populus-Genomic-Consequences-of-Hybridization are comparing it to the libraries listed below

• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated 3 months ago
• hugang123 / Dxy
  Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .
  ☆8Updated 6 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆16Updated last year
• jingwanglab / Widespread-linked-selection
  Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
  ☆11Updated 4 years ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 10 months ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated 10 months ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 4 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆16Updated 4 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆30Updated 10 months ago
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• YuboZhangPKU / ERICA
  ☆18Updated last year
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆19Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆11Updated 4 years ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆11Updated 4 months ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆32Updated 10 months ago
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆10Updated last month
• esayyari / DiscoVista
  ☆38Updated last year
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 3 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆18Updated 5 years ago
• SwallowGenomics / BarnSwallow
  ☆13Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated last week