jingwanglab / Populus-Genomic-Consequences-of-HybridizationLinks
☆16Updated 3 years ago
Alternatives and similar repositories for Populus-Genomic-Consequences-of-Hybridization
Users that are interested in Populus-Genomic-Consequences-of-Hybridization are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .☆8Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- ☆16Updated 3 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 8 months ago
- MSMC2 Scripts☆24Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Sex assignment through coverage☆18Updated last month
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- ☆19Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- ☆26Updated 2 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆18Updated last year
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆14Updated last year
- Some codes about evolutionary history of wheats☆8Updated last year
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Software package for estimating fine-scale recombination rate.☆14Updated 4 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆10Updated 2 years ago
- ☆30Updated 3 months ago