Alternatives and similar repositories for Populus-Genomic-Consequences-of-Hybridization:

Users that are interested in Populus-Genomic-Consequences-of-Hybridization are comparing it to the libraries listed below

• hugang123 / Dxy
  Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .
  ☆8Updated 6 years ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated last year
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆15Updated 5 months ago
• jingwanglab / Widespread-linked-selection
  Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
  ☆11Updated 5 years ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated last year
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆16Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 5 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆19Updated last year
• hsigeman / findZX
  ☆19Updated 2 years ago
• YuboZhangPKU / ERICA
  ☆18Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 3 years ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆10Updated 2 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆16Updated 4 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆30Updated 3 years ago
• jingwanglab / Populus_superpangenome
  Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …
  ☆14Updated 11 months ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 3 years ago
• zhangfumin / domestication
  ☆17Updated 2 years ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆12Updated 6 months ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆20Updated 5 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago