Alternatives and similar repositories for GBS_SNP_filter

Users that are interested in GBS_SNP_filter are comparing it to the libraries listed below

• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 5 months ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• hemstrow / snpR
  ☆31Updated this week
• ANGSD / NgsRelate
  ☆45Updated 9 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 3 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆38Updated last year
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated 2 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 8 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆47Updated 3 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• tplinderoth / ngsParalog
  Copy number variation detection using NGS data.
  ☆18Updated 2 years ago
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 5 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• bodkan / admixr
  An R interface for the ADMIXTOOLS software
  ☆34Updated last month
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 7 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• GATB / gatb-minia-pipeline
  GATB Minia assembly pipeline
  ☆31Updated 2 years ago
• JaeYoonKim72 / GMStool
  ☆17Updated 5 years ago
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated last year
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated 3 months ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last month
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆52Updated 5 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆31Updated 9 years ago