Snakemake module for the snpArcher pipeline for population size change inference.
☆10Nov 12, 2024Updated last year
Alternatives and similar repositories for popsize
Users that are interested in popsize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Callable Loci... and more☆21Apr 8, 2026Updated 4 months ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 4 months ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆96Jul 29, 2026Updated last month
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated 2 years ago
- Sex assignment through coverage☆20May 23, 2025Updated last year
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- ☆58Jun 12, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package for pedigree inference based on SNP data☆29Jan 4, 2026Updated 7 months ago
- This repository contains the latest version of the HomeRange data and R package.☆12Apr 17, 2025Updated last year
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 3 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- Sampling and inference of genealogies with recombination☆61Aug 21, 2026Updated last week
- MSMC2 Scripts☆28May 29, 2026Updated 3 months ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆32Aug 18, 2026Updated last week
- A minimal, low-class template for the static site generator Astro☆16Aug 8, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12May 12, 2026Updated 3 months ago
- set of docker-compose.yml + backup script☆21Oct 12, 2022Updated 3 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆27Jul 8, 2022Updated 4 years ago
- TELOmere SEARCH in Long sequencing Reads☆14Dec 26, 2025Updated 8 months ago
- AlphaImpute2: pedigree- and population-based genotype imputation☆14Updated this week
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 7 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated last month
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 5 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SambaR: Snp datA Management and Basic Analyses in R☆33Jul 9, 2026Updated last month
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- SvelteJS + fastapi + docker-compose (with mongodb and material ui support)☆17Jan 26, 2026Updated 7 months ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated last week