tforest / popsizeLinks
Snakemake module for the snpArcher pipeline for population size change inference.
☆10Updated 11 months ago
Alternatives and similar repositories for popsize
Users that are interested in popsize are comparing it to the libraries listed below
Sorting:
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Updated 2 years ago
- ☆42Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- Topology weighting by iterative sampling of sub-trees☆81Updated 9 months ago
- GONE: Scripts, programs and an example data set☆47Updated 2 months ago
- ☆31Updated 2 years ago
- Sampling and inference of genealogies with recombination☆43Updated 3 months ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- Topology weighting from unphased genotypes of any ploidy☆15Updated 2 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- ☆19Updated 7 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 9 months ago
- ☆27Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- ☆52Updated 4 months ago
- Hybridization detection using phylogenetic invariants☆49Updated 11 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago