speciationgenomics / presentations

Related projects ⓘ

Alternatives and complementary repositories for presentations

• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆40Updated 5 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 8 months ago
• xiaoming-liu / stairway-plot-v2
  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…
  ☆31Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆54Updated 2 weeks ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆30Updated 6 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated 2 weeks ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated 8 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 3 months ago
• clairemerot / angsd_pipeline
  ☆25Updated last year
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆41Updated 2 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆22Updated 8 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆10Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 2 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆32Updated 3 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆45Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆14Updated 4 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆56Updated 2 months ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆20Updated last month
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆21Updated 2 weeks ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆41Updated last week
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated last month