Alternatives and similar repositories for presentations

Users that are interested in presentations are comparing it to the libraries listed below

• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated last week
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆53Updated 2 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆58Updated last month
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆45Updated 3 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆26Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated 2 weeks ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆79Updated 7 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆60Updated 9 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 6 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated 11 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆35Updated last year
• rotifergirl / EvoEco-ECR-brainstorming
  ☆10Updated 5 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 10 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• kr-colab / ReLERNN
  Recombination Landscape Estimation using Recurrent Neural Networks
  ☆59Updated 4 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆61Updated 7 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆93Updated last year
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆47Updated 9 months ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 7 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year