Alternatives and similar repositories for phrynomics

Users that are interested in phrynomics are comparing it to the libraries listed below

• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆17Updated 3 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• gbradburd / SpaceMix
  ☆30Updated 3 years ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆16Updated 3 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆31Updated 4 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆21Updated 11 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 months ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆16Updated last year
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• ANGSD / NgsRelate
  ☆44Updated 7 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆27Updated 6 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆67Updated last week
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆66Updated 2 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 5 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated 3 months ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated 6 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆34Updated 8 months ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆53Updated 4 months ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• hemstrow / snpR
  ☆31Updated last month