Feature-aware Directed OrtholoG search
☆14Mar 10, 2026Updated last week
Alternatives and similar repositories for fDOG
Users that are interested in fDOG are comparing it to the libraries listed below
Sorting:
- A phylogenetic profile analysis tool☆38Mar 11, 2026Updated last week
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 weeks ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 5 months ago
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Updated this week
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 10 months ago
- Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)☆20Dec 15, 2025Updated 3 months ago
- Interactive plotting of data annotated with molecule structures.☆12Nov 30, 2023Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆93Mar 4, 2026Updated 2 weeks ago
- Analyse RNA feature distributions.☆19Dec 16, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 7 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- An awesome YAML-based CV that works with your existing Jekyll site☆11Jan 10, 2019Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆32Sep 11, 2025Updated 6 months ago
- This is a bot that integrations google sheets with discord API. It was intended to track participation for a game called CATS for Android…☆14Jan 8, 2022Updated 4 years ago
- A nodejs wrapper for the NCBI eUtils API.☆17Nov 21, 2025Updated 3 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆86Mar 12, 2026Updated last week
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆37Jan 3, 2026Updated 2 months ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- ☆12Feb 16, 2026Updated last month
- Automatic evaluation of HGTs☆30Jan 31, 2025Updated last year
- A pipeline creation tool using Snakemake☆13Mar 5, 2026Updated 2 weeks ago
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 8 months ago
- A Swiss-Army-Knife for Bioinformaticians☆14Mar 3, 2026Updated 2 weeks ago
- ☆53May 5, 2025Updated 10 months ago
- ☆11Mar 11, 2025Updated last year
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago