Feature-aware Directed OrtholoG search
☆14Aug 11, 2026Updated this week
Alternatives and similar repositories for fDOG
Users that are interested in fDOG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A phylogenetic profile analysis tool☆38Jul 29, 2026Updated 2 weeks ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 5 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆33Jul 9, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated 2 weeks ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)☆21Dec 15, 2025Updated 7 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Interactive plotting of data annotated with molecule structures.☆12Nov 30, 2023Updated 2 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 6 years ago
- This is a bot that integrations google sheets with discord API. It was intended to track participation for a game called CATS for Android…☆14Jan 8, 2022Updated 4 years ago
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 6 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 7 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An awesome YAML-based CV that works with your existing Jekyll site☆11Jan 10, 2019Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆37Sep 11, 2025Updated 11 months ago
- A nodejs wrapper for the NCBI eUtils API.☆17Nov 21, 2025Updated 8 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 weeks ago
- FastOMA is a scalable software package to infer orthology relationship.☆102Jul 26, 2026Updated 2 weeks ago
- This is a django app which you can modify and improve your autogenerated swagger documentation from your drf API.☆15Dec 26, 2022Updated 3 years ago
- Command Line Interface for Genomes on a Tree.☆14Mar 15, 2026Updated 4 months ago
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- ☆12Feb 16, 2026Updated 5 months ago
- Fitting dose-response models in R☆28May 21, 2024Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- New version of the Pandas + Jupyter workshop☆12Jul 6, 2023Updated 3 years ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- A pipeline creation tool using Snakemake☆14Jul 24, 2026Updated 2 weeks ago