Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
☆19Mar 31, 2026Updated 5 months ago
Alternatives and similar repositories for dadi-cli
Users that are interested in dadi-cli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- ☆13Aug 18, 2023Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Genetic Algorithm for Demographic Model Analysis☆57Feb 3, 2026Updated 7 months ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆71Mar 27, 2026Updated 5 months ago
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 11 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆23Aug 20, 2021Updated 5 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆169Updated this week
- ☆13Jul 8, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆27Jul 8, 2022Updated 4 years ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 4 months ago
- Codon-Aware Multiple Sequence Alignments☆19Nov 15, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 6 years ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 9 months ago
- ☆57Jun 12, 2025Updated last year
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆33Aug 18, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆50May 26, 2026Updated 3 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- Sampling and inference of genealogies with recombination☆63Aug 21, 2026Updated last month
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 8 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆90Jun 14, 2021Updated 5 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 6 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Sep 10, 2020Updated 6 years ago
- Accelerated Bayesian inference of population size history from whole genome data.☆36Apr 6, 2026Updated 5 months ago
- ☆22Jan 11, 2024Updated 2 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 7 months ago
- genotype dimensionality reduction with a VAE☆50Mar 11, 2025Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 7 months ago