Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
☆18Dec 4, 2025Updated 3 months ago
Alternatives and similar repositories for dadi-cli
Users that are interested in dadi-cli are comparing it to the libraries listed below
Sorting:
- ☆13Aug 18, 2023Updated 2 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- Accelerated Bayesian inference of population size history from whole genome data.☆33Sep 29, 2025Updated 5 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- Sampling and inference of genealogies with recombination☆53Jun 20, 2025Updated 8 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 10 months ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 7 months ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- ☆20Sep 10, 2020Updated 5 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Feb 7, 2026Updated 3 weeks ago
- ☆21Jan 11, 2024Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 7 years ago
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆22Aug 20, 2021Updated 4 years ago
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Oct 8, 2025Updated 4 months ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- ☆13May 13, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆155Oct 27, 2025Updated 4 months ago
- ☆55Jun 12, 2025Updated 8 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 10 years ago
- ☆12Oct 13, 2023Updated 2 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 weeks ago
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated 11 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated last month
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated this week