Tom-Jenkins / utility_scripts

Related projects ⓘ

Alternatives and complementary repositories for utility_scripts

• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆14Updated 4 years ago
• clairemerot / angsd_pipeline
  ☆25Updated last year
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆17Updated 5 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆23Updated 8 months ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆12Updated 6 months ago
• xiaoming-liu / stairway-plot-v2
  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…
  ☆31Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated 3 weeks ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 2 months ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆13Updated 3 weeks ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆14Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 weeks ago
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 3 years ago
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated last month
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated 8 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆30Updated 8 months ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆43Updated 10 months ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆15Updated 4 months ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 8 months ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆33Updated 3 years ago