Tom-Jenkins / utility_scripts
Scripts for population genetics analysis
☆19Updated 2 years ago
Alternatives and similar repositories for utility_scripts:
Users that are interested in utility_scripts are comparing it to the libraries listed below
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆18Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- ☆26Updated last year
- ☆18Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last week
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- ☆38Updated last year
- ☆15Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 3 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆12Updated 8 months ago
- ☆16Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆15Updated this week
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- R package for analysis of hybrids and hybrid zones☆19Updated last year
- Sex assignment through coverage☆17Updated 10 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ☆17Updated 6 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated 3 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆14Updated last month
- MSMC2 Scripts☆23Updated 10 months ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆15Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆32Updated 10 months ago
- Population assignment analysis using R☆17Updated 2 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 3 years ago