Alternatives and similar repositories for PCAviz

Users that are interested in PCAviz are comparing it to the libraries listed below

• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆16Updated 7 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated 10 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆33Updated 6 months ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated 2 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated last month
• hemstrow / snpR
  ☆30Updated 2 weeks ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for performing and teaching population genomic analyses
  ☆19Updated this week
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• kjgilbert / QstFstComp
  R Package for performing Qst-Fst analyses
  ☆21Updated 7 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆60Updated last month
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• bcm-uga / LEA
  ☆11Updated 5 months ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆14Updated 6 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆12Updated 6 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆13Updated 2 years ago
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆29Updated 4 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 5 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated this week
• StuntsPT / Structure_threader
  A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
  ☆25Updated last month