Alternatives and similar repositories for PCAviz:

Users that are interested in PCAviz are comparing it to the libraries listed below

• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆20Updated 7 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• kjgilbert / QstFstComp
  R Package for performing Qst-Fst analyses
  ☆21Updated 7 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• hemstrow / snpR
  ☆30Updated 2 weeks ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 7 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆29Updated 2 months ago
• alexkychen / assignPOP
  Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…
  ☆16Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• gbradburd / SpaceMix
  ☆30Updated 2 years ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 3 weeks ago
• martinsikora / admixr
  an R package for admixture analyses
  ☆17Updated 9 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆12Updated 6 years ago
• ANGSD / NgsRelate
  ☆43Updated last month
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• singhal / popgen_tutorial
  ☆11Updated 5 years ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 5 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• MaikeMorrison / FSTruct
  ☆13Updated last year
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆30Updated 2 months ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• mathii / europe_selection
  Analysis scripts from the paper "Eight thousand years of natural selection in Europe".
  ☆10Updated 9 years ago
• StoreyLab / bnpsd
  R package to model and simulate admixed populations
  ☆8Updated last year
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆14Updated last year