Alternatives and similar repositories for PCAviz

Users that are interested in PCAviz are comparing it to the libraries listed below

• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆33Updated 4 months ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆41Updated 9 months ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated 9 months ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 7 years ago
• hemstrow / snpR
  ☆30Updated last month
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆18Updated this week
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• ANGSD / NgsRelate
  ☆43Updated 3 months ago
• kjgilbert / QstFstComp
  R Package for performing Qst-Fst analyses
  ☆21Updated 7 years ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆22Updated 10 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 3 years ago
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆14Updated last year
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 5 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 5 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• StuntsPT / Structure_threader
  A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
  ☆25Updated 2 weeks ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 3 months ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆59Updated last week
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago