millanek / tutorialsLinks
Tutorials on phylogenetic and phylogenomic inference
☆48Updated last month
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Topology weighting by iterative sampling of sub-trees☆79Updated 5 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆68Updated 7 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆52Updated 4 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Tutorials on evolutionary genomics☆44Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- MSMC2 Scripts☆24Updated last year
- Hybridization detection using phylogenetic invariants☆47Updated 7 months ago
- ☆79Updated 10 months ago
- Scripts for analysis used during the course☆92Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆53Updated last week
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- Plastid Genome Annotator☆49Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 7 months ago
- ☆86Updated 3 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- NLR-Annotator upload☆66Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Portable solution to generate genome alignment chains using lastz☆56Updated last week
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- Compute postmortem damage patterns and decontaminate ancient genomes☆16Updated 4 years ago
- ☆26Updated 2 months ago
- Reference-free profiling of polyploid genomes☆116Updated 10 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 weeks ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆77Updated 4 months ago