millanek / tutorialsLinks
Tutorials on phylogenetic and phylogenomic inference
☆49Updated 8 months ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆82Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- MSMC2 Scripts☆28Updated 3 months ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- NLR-Annotator upload☆76Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆90Updated last year
- ☆42Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆35Updated 2 years ago
- ☆86Updated last month
- A program to call variants from genome alignment☆81Updated 8 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated 2 years ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Updated 9 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆76Updated last month
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated this week
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆64Updated last month
- A parallel wrapper for LTR_FINDER☆55Updated 9 months ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- Scripts for analysis used during the course☆93Updated last year
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago