SamiLhll / macrosyntR
R package for comparison of synteny conservation at the genome-wide scale.
☆13Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for macrosyntR
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- Automatic evaluation of HGTs☆25Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- ContScout sequence contamination filter tool☆16Updated last month
- Genome alignment and synteny plots☆27Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆19Updated 4 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- ☆24Updated 10 months ago
- ☆32Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated 3 weeks ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆12Updated 9 months ago
- ☆18Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆39Updated 2 years ago
- ☆29Updated last week
- Yet another Hi-C scaffolding tool☆19Updated 3 weeks ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- A genome assembly assessment pipeline.☆36Updated last year
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 2 years ago
- ☆36Updated last year
- Transposable Elements MOvement detection using LOng reads☆19Updated this week