R package for comparison of synteny conservation at the genome-wide scale.
☆17Jun 6, 2024Updated 2 years ago
Alternatives and similar repositories for macrosyntR
Users that are interested in macrosyntR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- que paquete☆10Jul 17, 2024Updated 2 years ago
- oxford dot plots☆176Sep 20, 2026Updated 3 weeks ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆53Feb 8, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated 2 weeks ago
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- ☆12Jun 7, 2024Updated 2 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated 2 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆52Sep 24, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- visualization of phylogenetic output files☆15Oct 23, 2023Updated 2 years ago
- In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.☆28Sep 20, 2023Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- ☆24Oct 6, 2026Updated last week
- Functional ANnoTAtion based on embedding space SImilArity☆22Sep 26, 2026Updated 2 weeks ago
- ☆22Sep 30, 2026Updated 2 weeks ago
- ☆38Sep 3, 2025Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 11 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆201Oct 5, 2026Updated last week
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- Any Way to Show Multi genomic Synteny☆232Oct 1, 2026Updated last week
- Inference of Ortholog Groups using Hidden Markov Models☆39Updated this week
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆14Jul 22, 2026Updated 2 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago
- A JBrowse plugin for plotting multiple bigwig subtracks☆12Feb 13, 2022Updated 4 years ago
- ☆16Apr 29, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identify and find telomeres, or telomeric repeats in a genome.☆177Oct 6, 2026Updated last week
- ☆269Jan 24, 2025Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆269Oct 7, 2026Updated last week
- R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititati…☆12Feb 8, 2023Updated 3 years ago