An R package for predicting ploidal level from sequence data using site-based heterozygosity
☆18Feb 19, 2026Updated last month
Alternatives and similar repositories for nQuack
Users that are interested in nQuack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- ☆13Dec 3, 2024Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Distribution maps and niche models for venomous snakes.☆12Mar 15, 2026Updated last week
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- ☆13May 13, 2024Updated last year
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆21Feb 5, 2023Updated 3 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 7 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated this week
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Telomere compliment tools☆28Nov 17, 2025Updated 4 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Apr 14, 2021Updated 4 years ago
- k-mer learning materials☆85Feb 14, 2025Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- method for modeling continuous and discrete population genetic structure☆38Jan 8, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated last month
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Jul 25, 2025Updated 8 months ago
- ☆33Mar 19, 2025Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 2 months ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Updated this week
- ☆10Nov 4, 2021Updated 4 years ago
- Topology weighting from unphased genotypes of any ploidy☆23Updated this week
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆32Mar 8, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- LeafMachine2 is a modular suite of computer vision and machine learning algorithms that enables efficient identification, location, and m…☆33Jan 30, 2026Updated last month
- A statistical framework for ploidy estimation using NGS short-read data☆62Apr 5, 2018Updated 7 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 6 months ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆39Updated this week
- ☆32Jun 15, 2023Updated 2 years ago
- ☆21Jan 11, 2024Updated 2 years ago