lrobidou / findere
☆17Updated this week
Related projects ⓘ
Alternatives and complementary repositories for findere
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆14Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- ☆25Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 7 months ago
- ☆14Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆22Updated 2 weeks ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- ☆25Updated 3 years ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- ☆14Updated 8 years ago
- Minimum plain text representation of kmer sets☆17Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated last month
- ☆17Updated last year
- Indel-aware consensus from aligned BAMs☆20Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- Index and query k-mer matrices in BGZF☆13Updated 6 years ago
- ☆12Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- A k-mer search engine for all Sequence Read Archive public accessions☆18Updated 3 weeks ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago