lrobidou / findere
☆17Updated 3 months ago
Alternatives and similar repositories for findere:
Users that are interested in findere are comparing it to the libraries listed below
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 4 months ago
- ☆25Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆14Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 10 months ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- ☆14Updated 9 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 4 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆28Updated 7 months ago
- ☆25Updated 3 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated last week
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- A long read simulator based on badread idea☆20Updated 2 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- ☆28Updated last year
- ☆14Updated 4 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated 9 months ago
- ☆15Updated 4 years ago