lrobidou / findere
☆17Updated 2 months ago
Alternatives and similar repositories for findere:
Users that are interested in findere are comparing it to the libraries listed below
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 3 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated 2 weeks ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 9 months ago
- ☆14Updated 2 years ago
- Minimum plain text representation of kmer sets☆17Updated this week
- ☆25Updated 3 years ago
- ☆14Updated 9 years ago
- ☆12Updated 3 years ago
- ☆14Updated 4 years ago
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆19Updated 3 months ago
- ☆25Updated 3 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Next Index to Query Kmer Intersection☆16Updated last year
- ☆10Updated 11 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 2 months ago
- ☆28Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆10Updated 4 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago