Alternatives and similar repositories for mkmh:

Users that are interested in mkmh are comparing it to the libraries listed below

• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• mchaisso / mcutils
  ☆12Updated last week
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 6 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆12Updated 7 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• VGP / vgp-tools
  ☆28Updated 3 weeks ago
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated 9 months ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆18Updated this week
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated last year
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• nh13 / fqme
  ☆22Updated 5 months ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago