Kingsford-Group / remuvalLinks
☆12Updated 6 years ago
Alternatives and similar repositories for remuval
Users that are interested in remuval are comparing it to the libraries listed below
Sorting:
- De Bruijn graph representation in low memory☆35Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- GBWT-based handle graph☆31Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆11Updated 4 years ago
- Index kmtricks bf matrices☆45Updated last week
- Pan-genome Seed Index☆20Updated 6 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- ☆28Updated 5 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- ☆24Updated 3 weeks ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆14Updated 5 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 7 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 months ago
- GBWT in Rust☆42Updated 5 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- ☆15Updated 5 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 9 months ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago