thegenemyers / DAMASKERLinks
Module to determine where repeats are and make soft-masks of said
☆10Updated last year
Alternatives and similar repositories for DAMASKER
Users that are interested in DAMASKER are comparing it to the libraries listed below
Sorting:
- Alignment-based Scrubbing pipeline☆21Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Updated 7 years ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- ☆34Updated 5 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- scripts to parse IrysView output☆11Updated 10 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆28Updated 4 months ago
- ☆21Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- ☆16Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- recompute GFA link overlaps☆26Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago