thegenemyers / DAMASKERLinks
Module to determine where repeats are and make soft-masks of said
☆10Updated last year
Alternatives and similar repositories for DAMASKER
Users that are interested in DAMASKER are comparing it to the libraries listed below
Sorting:
- Alignment-based Scrubbing pipeline☆20Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Long read to reference genome mapping tool☆13Updated last year
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- ☆34Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆21Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Convert HAL to VG☆22Updated 9 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Updated 3 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- ☆15Updated 4 years ago